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xeukleides10 X-Frontend for A Euclidean geometry drawing language
xfractint Fractint for X11
xgap GUI for GAP
xldlas XForms-based statistics package
xlife John Horton Conway's Game of Life
xlispstat Statistics/X11-based LISP interpreter
xmgr Powerful XY plotting tool for workstations or X-terminals using X
xylib Library for reading powder diffraction data
yacas Yet Another Computer Algebra System
yices2 Yices 2 SMT solver
yorick Numerical algebra system (similar to Matlab)
z3 The Z3 theorem prover / SMT solver